Tools & Libraries

NAVis

navis-org (Fly Connectomics group, Cambridge)

A general-purpose Python library for handling neuron skeletons, meshes, dotprops and image volumes, with 2D/3D plotting, morphometrics, NBLAST similarity and template-brain transforms built in. Developed in the Cambridge fly connectomics community as the Python counterpart of the R natverse, it plugs into neuPrint and, through the fafbseg extension, FlyWire/FAFB. Performance-critical pieces have been moved to Rust via navis-fastcore.

Official site ↗

NAVisnavis-org/navis docs (GPL-3.0)

#neuron-analysis#morphology#nblast#visualization#python-library

Sources checked

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