axoaxodend

For any pair of neuron sets in the male CNS, classifies every synapse between them by whether it lands on the target's dendrite or on its axon, and writes out a table plus a Clio-NG scene that opens without hosting anything. Two implementations disagree and the README says which to trust: the navis split by synapse flow centrality is for numbers, while the single-edge R cut can land anywhere on a weakly polarised cell. On AVLP743m body 531383 it reports a segregation index of 0.01 where navis gets 0.20, and it calls 13% of AVLP749m to PAM01/PAM02 synapses axo-axonic where navis calls none.

Official site ↗

#synapses#axo-axonic#navis#neuroglancer#neuprint#r